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1

The Lipid World

Daniel Segré, Dafna Ben-Eli, David W. Deamer, Doron Lancet

Journal:

Origins of Life and Evolution of Biospheres

Year:

2001

Language:

english

File:

PDF, 206 KB

english, 2001

2

Graded Autocatalysis Replication Domain (GARD): Kinetic Analysis of Self-Replication in Mutually Catalytic Sets

Daniel Segré, Doron Lancet*, Ora Kedem, Yitzhak Pilpel

Journal:

Origins of Life and Evolution of Biospheres

Year:

1998

Language:

english

File:

PDF, 372 KB

english, 1998

3

The dynamics of hybrid metabolic-genetic oscillators

Reznik, Ed, Kaper, Tasso J., Segrè, Daniel

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2013

Language:

english

File:

PDF, 1.76 MB

english, 2013

4

Remnants of an Ancient Metabolism without Phosphate

Goldford, Joshua E., Hartman, Hyman, Smith, Temple F., Segrè, Daniel

Journal:

Year:

2017

Language:

english

File:

PDF, 2.67 MB

english, 2017

5

Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems

Pacheco, Alan R., Moel, Mauricio, Segrè, Daniel

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 1.68 MB

english, 2019

6

The Molecular Roots of Compositional Inheritance

DANIEL SEGRÉ, BARAK SHENHAV, RON KAFRI, DORON LANCET

Journal:

Journal of Theoretical Biology

Year:

2001

Language:

english

File:

PDF, 421 KB

english, 2001

7

Shewanella oneidensis in a lactate-fed pure-culture and a glucose-fed co-culture with Lactococcus lactis with an electrode as electron acceptor

Miriam A. Rosenbaum, Haim Y. Bar, Qasim K. Beg, Daniel Segrè, James Booth, Michael A. Cotta, Largus T. Angenent

Journal:

Bioresource Technology

Year:

2011

Language:

english

File:

PDF, 411 KB

english, 2011

8

An X-ray absorption spectroscopy study of Mo oxidation in Pb at elevated temperatures

Shanshan Liu, Daniel Olive, Jeff Terry, Carlo U. Segre

Journal:

Journal of Nuclear Materials

Year:

2009

Language:

english

File:

PDF, 596 KB

english, 2009

9

Bounded-overhead caching for definite-clause theorem proving

Alberto Segre, Daniel Scharstein

Journal:

Journal of Automated Reasoning

Year:

1993

Language:

english

File:

PDF, 2.43 MB

english, 1993

10

Self replication and chemical selection in primordial mutually catalytic sets

Doron Lancet, Gustavo Glusman, Daniel Segré, Ora Kedem, Yizhaq Pilpel

Journal:

Origins of Life and Evolution of Biospheres

Year:

1996

Language:

english

File:

PDF, 121 KB

english, 1996

11

Ecosystems biology of microbial metabolism

Niels Klitgord, Daniel Segrè

Journal:

Current Opinion in Biotechnology

Year:

2011

Language:

english

File:

PDF, 149 KB

english, 2011

12

On the stability of metabolic cycles

Ed Reznik, Daniel Segrè

Journal:

Journal of Theoretical Biology

Year:

2010

Language:

english

File:

PDF, 575 KB

english, 2010

13

Life as a chemical automaton

Journal:

Journal of Biogeography

Year:

2005

Language:

english

File:

PDF, 41 KB

english, 2005

14

Dichotomy of single-nucleotide polymorphism haplotypes in olfactory receptor genes and pseudogenes

Gilad, Yoav, Segré, Daniel, Skorecki, Karl, Nachman, Michael W., Lancet, Doron, Sharon, Dror

Journal:

Nature Genetics

Year:

2000

Language:

english

File:

PDF, 97 KB

english, 2000

15

Modular epistasis in yeast metabolism

Segrè, Daniel, DeLuna, Alexander, Church, George M, Kishony, Roy

Journal:

Nature Genetics

Year:

2004

Language:

english

File:

PDF, 431 KB

english, 2004

16

The regulatory software of cellular metabolism

Journal:

Trends in Biotechnology

Year:

2004

Language:

english

File:

PDF, 845 KB

english, 2004

17

Transcriptional Analysis of Shewanella oneidensis MR-1 with an Electrode Compared to Fe(III)Citrate or Oxygen as Terminal Electron Acceptor

Rosenbaum, Miriam A., Bar, Haim Y., Beg, Qasim K., Segrè, Daniel, Booth, James, Cotta, Michael A., Angenent, Largus T., Cornelis, Pierre

Journal:

Year:

2012

Language:

english

File:

PDF, 726 KB

english, 2012

18

Comparative multi-goal tradeoffs in systems engineering of microbial metabolism

David Byrne, Alexandra Dumitriu, Daniel Segrè

Journal:

BMC Systems Biology

Year:

2012

Language:

english

File:

PDF, 1.48 MB

english, 2012

19

From Annotated Genomes to Metabolic Flux Models and Kinetic Parameter Fitting

Segrè, Daniel, Zucker, Jeremy, Katz, Jeremy, Lin, Xiaoxia, D'Haeseleer, Patrik, Rindone, Wayne P., Kharchenko, Peter, Nguyen, Dat H., Wright, Matthew A., Church, George M.

Journal:

Omics A Journal of Integrative Biology

Year:

2003

Language:

english

File:

PDF, 478 KB

english, 2003

20

Environments that Induce Synthetic Microbial Ecosystems

Klitgord, Niels, Segrè, Daniel, Papin, Jason A.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 939 KB

english, 2010

21

Invariance and optimality in the regulation of an enzyme

Ed Reznik, Stefan Yohe, Daniel Segrè

Journal:

Year:

2013

Language:

english

File:

PDF, 299 KB

english, 2013

22

Genome Informatics Series [Imperial College Press Genome Informatics 2009 - 9th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2009) - Boston University, Boston, USA (2009.07.27-2009.07.29)] Genome Informatics 2009 - Proceedings of the 9th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2009) - THE IMPORTANCE OF COMPARTMENTALIZATION IN METABOLIC FLUX MODELS: YEAST AS AN ECOSYSTEM OF ORGANELLES

KLITGORD, NIELS, SEGRÈ, DANIEL

Year:

2010

Language:

english

File:

PDF, 2.40 MB

english, 2010

23

Increases in Bone Density During Treatment of Men with Idiopathic Hypogonadotropic Hypogonadism*

FINKELSTEIN, JOEL S., KLIBANSKI, ANNE, NEER, ROBERT M., DOPPELT, SAMUEL H., ROSENTHAL, DANIEL I., SEGRE, GINO V., CROWLEY, WILLIAM F.

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

1989

Language:

english

File:

PDF, 1.22 MB

english, 1989

24

The average enzyme principle

Reznik, Ed, Chaudhary, Osman, Segrè, Daniel

Journal:

Year:

2013

Language:

english

File:

PDF, 555 KB

english, 2013

25

Chemical and Electrochemical Lithiation of LiVOPO 4 Cathodes for Lithium-Ion Batteries

Harrison, Katharine L., Bridges, Craig A., Segre, Carlo U., Varnado, C. Daniel, Applestone, Danielle, Bielawski, Christopher W., Paranthaman, Mariappan Parans, Manthiram, Arumugam

Journal:

Chemistry of Materials

Year:

2014

Language:

english

File:

PDF, 3.12 MB

english, 2014

26

Geographical Characterization of Italian Extra Virgin Olive Oils Using High-Field 1 H NMR Spectroscopy

Mannina, Luisa, Patumi, Maurizio, Proietti, Noemi, Bassi, Daniele, Segre, Anna Laura

Journal:

Journal of Agricultural and Food Chemistry

Year:

2001

Language:

english

File:

PDF, 152 KB

english, 2001

27

EPR of trans-stilbene radical cations formed in zeolite cavities: a new approach to study the zeolite void space

Bonora, Marco, Brustolon, Marina, Storaro, Loretta, Casagrande, Manuela, Biglino, Daniele, Itagaki, Yoshiteru, Segre, Ulderico, Lenarda, Maurizio

Journal:

Physical Chemistry Chemical Physics

Year:

2000

Language:

english

File:

PDF, 150 KB

english, 2000

28

Introduction to Focus Issue: Genetic Interactions

Segrè, Daniel, Marx, Christopher J.

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2010

Language:

english

File:

PDF, 314 KB

english, 2010

29

Modeling the complex dynamics of enzyme-pathway coevolution

Schütte, Moritz, Skupin, Alexander, Segrè, Daniel, Ebenhöh, Oliver

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2010

Language:

english

File:

PDF, 1.21 MB

english, 2010

30

Photoemission studies of fluorine functionalized porous graphitic carbon

Ganegoda, Hasitha, Jensen, David S., Olive, Daniel, Cheng, Lidens, Segre, Carlo U., Linford, Matthew R., Terry, Jeff

Journal:

Journal of Applied Physics

Year:

2012

Language:

english

File:

PDF, 832 KB

english, 2012

31

Spectroscopic Evidence of Uranium Immobilization in Acidic Wetlands by Natural Organic Matter and Plant Roots

Li, Dien, Kaplan, Daniel I., Chang, Hyun-Shik, Seaman, John C., Jaffé, Peter R., Koster van Groos, Paul, Scheckel, Kirk G., Segre, Carlo U., Chen, Ning, Jiang, De-Tong, Newville, Matthew, Lanzirotti,

Journal:

Environmental Science & Technology

Year:

2015

Language:

english

File:

PDF, 1.31 MB

english, 2015

32

MESOBIOTIC EMERGENCE: MOLECULAR AND ENSEMBLE COMPLEXITY IN EARLY EVOLUTION

SHENHAV, BARAK, SEGRÈ, DANIEL, LANCET, DORON

Journal:

Advances in Complex Systems

Year:

2003

Language:

english

File:

PDF, 806 KB

english, 2003

33

Signatures of Arithmetic Simplicity in Metabolic Network Architecture

Riehl, William J., Krapivsky, Paul L., Redner, Sidney, Segrè, Daniel, Papin, Jason A.

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.44 MB

english, 2010

34

Epistatic Interaction Maps Relative to Multiple Metabolic Phenotypes

Snitkin, Evan S., Segrè, Daniel, Mackay, Trudy F. C.

Journal:

Year:

2011

Language:

english

File:

PDF, 2.11 MB

english, 2011

35

Flux Imbalance Analysis and the Sensitivity of Cellular Growth to Changes in Metabolite Pools

Reznik, Ed, Mehta, Pankaj, Segrè, Daniel, Maranas, Costas D.

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.77 MB

english, 2013

36

An Allosteric Mechanism for Switching between Parallel Tracks in Mammalian Sulfur Metabolism

Korendyaseva, Tatyana K., Kuvatov, Denis N., Volkov, Vladimir A., Martinov, Michael V., Vitvitsky, Victor M., Banerjee, Ruma, Ataullakhanov, Fazoil I., Segre, Daniel

Journal:

PLoS Computational Biology

Year:

2008

Language:

english

File:

PDF, 442 KB

english, 2008

37

Temporal Expression-based Analysis of Metabolism

Collins, Sara B., Reznik, Ed, Segrè, Daniel, Papin, Jason A.

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 809 KB

english, 2012

38

Synthetic Ecology of Microbes: Mathematical Models and Applications

Zomorrodi, Ali R., Segrè, Daniel

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 1.49 MB

english, 2015

39

[IEEE 2015 54th IEEE Conference on Decision and Control (CDC) - Osaka, Japan (2015.12.15-2015.12.18)] 2015 54th IEEE Conference on Decision and Control (CDC) - Learning cellular objectives from fluxes by inverse optimization

Zhao, Qi, Stettner, Arion, Reznik, Ed, Segre, Daniel, Paschalidis, Ioannis Ch.

Year:

2015

Language:

english

File:

PDF, 468 KB

english, 2015

40

[American Institute of Aeronautics and Astronautics 2001 Conference and Exhibit on International Space Station Utilization - Cape Canaveral,FL,U.S.A. (15 October 2001 - 18 October 2001)] 2001 Conference and Exhibit on International Space Station Utilization - Physics of Colloids in Space-2 (PCS-2)

Manley, Suliana, Rudhardt, Daniel, Dinsmore, Anthony, e, al, Sankaran, Subramanian, Weitz, David, Bailey, Arthur, Gasser, Urs, Segre, Phil, Prasad, Vikram, Valentine, Megan

Year:

2001

Language:

english

File:

PDF, 1.69 MB

english, 2001

41

SPIE Proceedings [SPIE SPIE's International Symposium on Optical Science, Engineering, and Instrumentation - Denver, CO (Sunday 18 July 1999)] Instruments, Methods, and Missions for Astrobiology II - GARDobes: primordial cell nano-precursors with organic catalysis, compositional genome, and capacity to evolve

Segre, Daniel, Ben-Eli, Dafna, Pilpel, Yitzhak, Kedem, Ora, Lancet, Doron, Hoover, Richard B.

Year:

1999

Language:

english

File:

PDF, 643 KB

english, 1999

42

Life as a Chemical Automaton

Journal:

Journal of Biogeography

Year:

2005

Language:

english

File:

PDF, 358 KB

english, 2005

43

Epistasis from functional dependence of fitness on underlying traits

Hsuan-Chao Chiu, Christopher J. Marx and Daniel Segrè

Journal:

Proceedings Biological Sciences

Year:

2012

Language:

english

File:

PDF, 1.78 MB

english, 2012

44

[IEEE 2016 IEEE 55th Conference on Decision and Control (CDC) - Las Vegas, NV, USA (2016.12.12-2016.12.14)] 2016 IEEE 55th Conference on Decision and Control (CDC) - Optimal allocation of metabolic functions among organisms in a microbial ecosystem

Zhao, Qi, Segre, Daniel, Paschalidisy, Ioannis Ch.

Year:

2016

Language:

english

File:

PDF, 560 KB

english, 2016

45

Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic Activity

Reznik, Ed, Christodoulou, Dimitris, Goldford, Joshua E., Briars, Emma, Sauer, Uwe, Segrè, Daniel, Noor, Elad

Journal:

Year:

2017

Language:

english

File:

PDF, 2.11 MB

english, 2017

46

Genome-driven evolutionary game theory helps understand the rise of metabolic interdependencies in microbial communities

Zomorrodi, Ali R., Segrè, Daniel

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.42 MB

english, 2017

47

Modern views of ancient metabolic networks

Goldford, Joshua E., Segrè, Daniel

Journal:

Current Opinion in Systems Biology

Year:

2018

Language:

english

File:

PDF, 864 KB

english, 2018

48

The Cell as a Decision-Making Unit

Castelli, Lorenzo, Pesenti, Raffaele, Segre, Daniel

Journal:

IEEE Life Sciences Letters

Year:

2016

Language:

english

File:

PDF, 1.22 MB

english, 2016

49

[IMPERIAL COLLEGE PRESS Proceedings of the 9th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2009) - Boston University, Boston, USA (27 – 29 July 2009)] Genome Informatics 2009 - CO-EVOLUTION OF METABOLISM AND PROTEIN SEQUENCES

SCHÜTTE, MORITZ, KLITGORD, NIELS, SEGRÈ, DANIEL, EBENHÖH, OLIVER

Language:

english

File:

PDF, 1.78 MB

english

50

Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0

Granger, Brian R., Chang, Yi-Chien, Wang, Yan, DeLisi, Charles, Segrè, Daniel, Hu, Zhenjun, Prlic, Andreas

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 732 KB

english, 2016

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